cwl_utils.tests.test_parser_utils

Test the CWL parsers utility functions.

Functions

`test_static_checker_fail`(cwlVersion)	Confirm that static type checker raises expected exception.
`test_static_checker_warning`(caplog)
`test_static_checker_success`(cwlVersion)	Confirm that static type checker correctly validates workflows.
`test_v1_0_file_content_64_kB`()	Test that reading file content is allowed up to 64kB in CWL v1.0.
`test_v1_0_file_content_larger_than_64_kB`()	Test that reading file content is truncated to 64kB for larger files in CWL v1.0.
`test_v_1_0_load_inputfile_with_format`()	Test that File object with the format field is correctly loaded with CWL v1.0.
`test_v_1_0_load_inputfile_with_nested_array`()	Test that nested arrays are preserved when loading an input file with CWL v1.0.
`test_v_1_0_load_inputfile_with_secondary_files`()	Test that secondary files are treated as objects when loading an input file with CWL v1.0.
`test_v1_0_stdout_to_file`()	Test that stdout shortcut is converted to stdout parameter with CWL v1.0.
`test_v1_0_stdout_to_file_with_binding`()	Test that outputBinding is not allowed with stdout shortcut with CWL v1.0.
`test_v1_0_stdout_to_file_preserve_original`()	Test that stdout parameter prevails on stdout shortcut with CWL v1.0.
`test_v1_0_stderr_to_file`()	Test that stderr shortcut is converted to stderr parameter with CWL v1.0.
`test_v1_0_stderr_to_file_with_binding`()	Test that outputBinding is not allowed with stderr shortcut with CWL v1.0.
`test_v1_0_stderr_to_file_preserve_original`()	Test that stderr parameter prevails on stdout shortcut with CWL v1.0.
`test_v1_0_type_compare_list`()	Test that the type comparison works correctly a list type with CWL v1.0.
`test_v1_0_type_compare_record`()	Test that the type comparison works correctly a record type with CWL v1.0.
`test_v1_0_type_for_source`()	Test that the type is correctly inferred from a source id with CWL v1.0.
`test_v1_0_type_for_source_with_id`()	Test that the type is correctly inferred from a source id with CWL v1.0.
`test_v1_0_type_for_stdout`()	Test that the stdout type is correctly matched with the File type in CWL v1.0.
`test_v1_0_type_output_source_record`()	Test that the type is correctly inferred from a record output source with CWL v1.0.
`test_v1_0_type_for_output_source_with_single_scatter_step`()	Test that the type is correctly inferred from a single scatter step with CWL v1.0.
`test_v1_0_type_for_output_source_with_nested_crossproduct_scatter_step`()	Test that the type is correctly inferred from a nested_crossproduct scatter step with CWL v1.0.
`test_v1_0_type_for_output_source_with_flat_crossproduct_scatter_step`()	Test that the type is correctly inferred from a flat_crossproduct scatter step with CWL v1.0.
`test_v1_0_type_for_source_with_multiple_entries_merge_nested`()	Test that the type is correctly inferred from a list of source ids and merge_nested with CWL v1.0.
`test_v1_0_type_for_source_with_multiple_entries_merge_flattened`()	Test that the type is correctly inferred from a list of source ids and merge_flattened with CWL v1.0.
`test_v1_0_type_for_source_with_single_entry_merge_nested`()	Test that the type is correctly inferred from a single source id and merge_nested with CWL v1.0.
`test_v1_0_type_for_source_with_single_entry_merge_flattened`()	Test that the type is correctly inferred from a single source id and merge_flattened with CWL v1.0.
`test_v1_1_file_content_64_kB`()	Test that reading file content is allowed up to 64kB in CWL v1.1.
`test_v1_1_file_content_larger_than_64_kB`()	Test that reading file content is truncated to 64kB for larger files in CWL v1.1.
`test_v_1_1_load_inputfile_with_format`()	Test that File object with the format field is correctly loaded with CWL v1.1.
`test_v_1_1_load_inputfile_with_nested_array`()	Test that nested arrays are preserved when loading an input file with CWL v1.1.
`test_v_1_1_load_inputfile_with_requirements`()	Test that an input file with the cwl:requirements directive is correctly loaded with CWL v1.1.
`test_v_1_1_load_inputfile_with_secondary_files`()	Test that secondary files are treated as objects when loading an input file with CWL v1.1.
`test_v1_1_stdout_to_file`()	Test that stdout shortcut is converted to stdout parameter with CWL v1.1.
`test_v1_1_stdout_to_file_with_binding`()	Test that outputBinding is not allowed with stdout shortcut with CWL v1.1.
`test_v1_1_stdout_to_file_preserve_original`()	Test that stdout parameter prevails on stdout shortcut with CWL v1.1.
`test_v1_1_stderr_to_file`()	Test that stderr shortcut is converted to stderr parameter with CWL v1.1.
`test_v1_1_stderr_to_file_with_binding`()	Test that outputBinding is not allowed with stderr shortcut with CWL v1.1.
`test_v1_1_stderr_to_file_preserve_original`()	Test that stderr parameter prevails on stdout shortcut with CWL v1.1.
`test_v1_1_stdin_to_file`()	Test that stdin shortcut is converted to stdin parameter with CWL v1.1.
`test_v1_1_stdin_to_file_with_binding`()	Test that inputBinding is not allowed with stdin shortcut with CWL v1.1.
`test_v1_1_stdin_to_file_fail_with_original`()	Test that stdin shortcut fails when stdin parameter is defined with CWL v1.1.
`test_v1_1_type_compare_list`()	Test that the type comparison works correctly a list type with CWL v1.1.
`test_v1_1_type_compare_record`()	Test that the type comparison works correctly a record type with CWL v1.1.
`test_v1_1_type_for_source`()	Test that the type is correctly inferred from a source id with CWL v1.1.
`test_v1_1_type_for_source_with_id`()	Test that the type is correctly inferred from a source id with CWL v1.1.
`test_v1_1_type_for_stdout`()	Test that the stdout type is correctly matched with the File type in CWL v1.1.
`test_v1_1_type_output_source_record`()	Test that the type is correctly inferred from a record output source with CWL v1.1.
`test_v1_1_type_for_output_source_with_single_scatter_step`()	Test that the type is correctly inferred from a single scatter step with CWL v1.1.
`test_v1_1_type_for_output_source_with_nested_crossproduct_scatter_step`()	Test that the type is correctly inferred from a nested_crossproduct scatter step with CWL v1.1.
`test_v1_1_type_for_output_source_with_flat_crossproduct_scatter_step`()	Test that the type is correctly inferred from a flat_crossproduct scatter step with CWL v1.1.
`test_v1_1_type_for_source_with_multiple_entries_merge_nested`()	Test that the type is correctly inferred from a list of source ids and merge_nested with CWL v1.1.
`test_v1_1_type_for_source_with_multiple_entries_merge_flattened`()	Test that the type is correctly inferred from a list of source ids and merge_flattened with CWL v1.1.
`test_v1_1_type_for_source_with_single_entry_merge_nested`()	Test that the type is correctly inferred from a single source id and merge_nested with CWL v1.1.
`test_v1_1_type_for_source_with_single_entry_merge_flattened`()	Test that the type is correctly inferred from a single source id and merge_flattened with CWL v1.1.
`test_v1_2_file_content_64_kB`()	Test that reading file content is allowed up to 64kB in CWL v1.2.
`test_v1_2_file_content_larger_than_64_kB`()	Test that reading file content fails for files larger than 64kB in CWL v1.0.
`test_v_1_2_load_inputfile_with_format`()	Test that File object with the format field is correctly loaded with CWL v1.2.
`test_v_1_2_load_inputfile_with_nested_array`()	Test that nested arrays are preserved when loading an input file with CWL v1.2.
`test_v_1_2_load_inputfile_with_requirements`()	Test that an input file with the cwl:requirements directive is correctly loaded with CWL v1.2.
`test_v_1_2_load_inputfile_with_secondary_files`()	Test that secondary files are treated as objects when loading an input file with CWL v1.2.
`test_v1_2_stdout_to_file`()	Test that stdout shortcut is converted to stdout parameter with CWL v1.2.
`test_v1_2_stdout_to_file_with_binding`()	Test that outputBinding is not allowed with stdout shortcut with CWL v1.2.
`test_v1_2_stdout_to_file_preserve_original`()	Test that stdout parameter prevails on stdout shortcut with CWL v1.2.
`test_v1_2_stderr_to_file`()	Test that stderr shortcut is converted to stderr parameter with CWL v1.2.
`test_v1_2_stderr_to_file_with_binding`()	Test that outputBinding is not allowed with stderr shortcut with CWL v1.2.
`test_v1_2_stderr_to_file_preserve_original`()	Test that stderr parameter prevails on stdout shortcut with CWL v1.2.
`test_v1_2_stdin_to_file`()	Test that stdin shortcut is converted to stdin parameter with CWL v1.2.
`test_v1_2_stdin_to_file_with_binding`()	Test that inputBinding is not allowed with stdin shortcut with CWL v1.2.
`test_v1_2_stdin_to_file_fail_with_original`()	Test that stdin shortcut fails when stdin parameter is defined with CWL v1.2.
`test_v1_2_type_compare_list`()	Test that the type comparison works correctly a list type with CWL v1.2.
`test_v1_2_type_compare_record`()	Test that the type comparison works correctly a record type with CWL v1.2.
`test_v1_2_type_for_source`()	Test that the type is correctly inferred from a source id with CWL v1.2.
`test_v1_2_type_for_source_with_id`()	Test that the type is correctly inferred from a source id with CWL v1.2.
`test_v1_2_type_for_stdout`()	Test that the stdout type is correctly matched with the File type in CWL v1.2.
`test_v1_2_type_output_source_record`()	Test that the type is correctly inferred from a record output source with CWL v1.2.
`test_v1_2_type_for_output_source_with_single_scatter_step`()	Test that the type is correctly inferred from a single scatter step with CWL v1.2.
`test_v1_2_type_for_output_source_with_nested_crossproduct_scatter_step`()	Test that the type is correctly inferred from a nested_crossproduct scatter step with CWL v1.2.
`test_v1_2_type_for_output_source_with_flat_crossproduct_scatter_step`()	Test that the type is correctly inferred from a flat_crossproduct scatter step with CWL v1.2.
`test_v1_2_type_for_source_with_multiple_entries_merge_nested`()	Test that the type is correctly inferred from a list of source ids and merge_nested with CWL v1.2.
`test_v1_2_type_for_source_with_multiple_entries_merge_flattened`()	Test that the type is correctly inferred from a list of source ids and merge_flattened with CWL v1.2.
`test_v1_2_type_for_source_with_single_entry_merge_nested`()	Test that the type is correctly inferred from a single source id and merge_nested with CWL v1.2.
`test_v1_2_type_for_source_with_single_entry_merge_flattened`()	Test that the type is correctly inferred from a single source id and merge_flattened with CWL v1.2.
`test_v1_2_type_for_source_with_multiple_entries_first_non_null`()	Test that the type is correctly inferred from a list of source ids and first_non_null with CWL v1.2.
`test_v1_2_type_for_source_with_multiple_entries_the_only_non_null`()	Test that the type is correctly inferred from a list of source ids and the_only_non_null with CWL v1.2.
`test_v1_2_type_for_source_with_multiple_entries_all_non_null`()	Test that the type is correctly inferred from a list of source ids and all_non_null with CWL v1.2.
`test_v1_2_type_for_source_with_single_entry_first_non_null`()	Test that the type is correctly inferred from a single source id and first_non_null with CWL v1.2.
`test_v1_2_type_for_source_with_single_entry_the_only_non_null`()	Test that the type is correctly inferred from a single source id and the_only_non_null with CWL v1.2.
`test_v1_2_type_for_source_with_single_entry_all_non_null`()	Test that the type is correctly inferred from a single source id and all_non_null with CWL v1.2.

Module Contents

cwl_utils.tests.test_parser_utils.test_static_checker_fail(cwlVersion)

Confirm that static type checker raises expected exception.

Parameters:: cwlVersion (str)
Return type:: None

cwl_utils.tests.test_parser_utils.test_static_checker_warning(caplog)

Parameters:: caplog (pytest.LogCaptureFixture)
Return type:: None

cwl_utils.tests.test_parser_utils.test_static_checker_success(cwlVersion)

Confirm that static type checker correctly validates workflows.

Parameters:: cwlVersion (str)
Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_0_file_content_64_kB()

Test that reading file content is allowed up to 64kB in CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_0_file_content_larger_than_64_kB()

Test that reading file content is truncated to 64kB for larger files in CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v_1_0_load_inputfile_with_format()

Test that File object with the format field is correctly loaded with CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v_1_0_load_inputfile_with_nested_array()

Test that nested arrays are preserved when loading an input file with CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v_1_0_load_inputfile_with_secondary_files()

Test that secondary files are treated as objects when loading an input file with CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_0_stdout_to_file()

Test that stdout shortcut is converted to stdout parameter with CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_0_stdout_to_file_with_binding()

Test that outputBinding is not allowed with stdout shortcut with CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_0_stdout_to_file_preserve_original()

Test that stdout parameter prevails on stdout shortcut with CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_0_stderr_to_file()

Test that stderr shortcut is converted to stderr parameter with CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_0_stderr_to_file_with_binding()

Test that outputBinding is not allowed with stderr shortcut with CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_0_stderr_to_file_preserve_original()

Test that stderr parameter prevails on stdout shortcut with CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_0_type_compare_list()

Test that the type comparison works correctly a list type with CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_0_type_compare_record()

Test that the type comparison works correctly a record type with CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_0_type_for_source()

Test that the type is correctly inferred from a source id with CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_0_type_for_source_with_id()

Test that the type is correctly inferred from a source id with CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_0_type_for_stdout()

Test that the stdout type is correctly matched with the File type in CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_0_type_output_source_record()

Test that the type is correctly inferred from a record output source with CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_0_type_for_output_source_with_single_scatter_step()

Test that the type is correctly inferred from a single scatter step with CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_0_type_for_output_source_with_nested_crossproduct_scatter_step()

Test that the type is correctly inferred from a nested_crossproduct scatter step with CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_0_type_for_output_source_with_flat_crossproduct_scatter_step()

Test that the type is correctly inferred from a flat_crossproduct scatter step with CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_0_type_for_source_with_multiple_entries_merge_nested()

Test that the type is correctly inferred from a list of source ids and merge_nested with CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_0_type_for_source_with_multiple_entries_merge_flattened()

Test that the type is correctly inferred from a list of source ids and merge_flattened with CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_0_type_for_source_with_single_entry_merge_nested()

Test that the type is correctly inferred from a single source id and merge_nested with CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_0_type_for_source_with_single_entry_merge_flattened()

Test that the type is correctly inferred from a single source id and merge_flattened with CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_file_content_64_kB()

Test that reading file content is allowed up to 64kB in CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_file_content_larger_than_64_kB()

Test that reading file content is truncated to 64kB for larger files in CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v_1_1_load_inputfile_with_format()

Test that File object with the format field is correctly loaded with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v_1_1_load_inputfile_with_nested_array()

Test that nested arrays are preserved when loading an input file with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v_1_1_load_inputfile_with_requirements()

Test that an input file with the cwl:requirements directive is correctly loaded with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v_1_1_load_inputfile_with_secondary_files()

Test that secondary files are treated as objects when loading an input file with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_stdout_to_file()

Test that stdout shortcut is converted to stdout parameter with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_stdout_to_file_with_binding()

Test that outputBinding is not allowed with stdout shortcut with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_stdout_to_file_preserve_original()

Test that stdout parameter prevails on stdout shortcut with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_stderr_to_file()

Test that stderr shortcut is converted to stderr parameter with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_stderr_to_file_with_binding()

Test that outputBinding is not allowed with stderr shortcut with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_stderr_to_file_preserve_original()

Test that stderr parameter prevails on stdout shortcut with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_stdin_to_file()

Test that stdin shortcut is converted to stdin parameter with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_stdin_to_file_with_binding()

Test that inputBinding is not allowed with stdin shortcut with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_stdin_to_file_fail_with_original()

Test that stdin shortcut fails when stdin parameter is defined with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_type_compare_list()

Test that the type comparison works correctly a list type with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_type_compare_record()

Test that the type comparison works correctly a record type with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_type_for_source()

Test that the type is correctly inferred from a source id with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_type_for_source_with_id()

Test that the type is correctly inferred from a source id with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_type_for_stdout()

Test that the stdout type is correctly matched with the File type in CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_type_output_source_record()

Test that the type is correctly inferred from a record output source with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_type_for_output_source_with_single_scatter_step()

Test that the type is correctly inferred from a single scatter step with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_type_for_output_source_with_nested_crossproduct_scatter_step()

Test that the type is correctly inferred from a nested_crossproduct scatter step with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_type_for_output_source_with_flat_crossproduct_scatter_step()

Test that the type is correctly inferred from a flat_crossproduct scatter step with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_type_for_source_with_multiple_entries_merge_nested()

Test that the type is correctly inferred from a list of source ids and merge_nested with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_type_for_source_with_multiple_entries_merge_flattened()

Test that the type is correctly inferred from a list of source ids and merge_flattened with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_type_for_source_with_single_entry_merge_nested()

Test that the type is correctly inferred from a single source id and merge_nested with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_1_type_for_source_with_single_entry_merge_flattened()

Test that the type is correctly inferred from a single source id and merge_flattened with CWL v1.1.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_file_content_64_kB()

Test that reading file content is allowed up to 64kB in CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_file_content_larger_than_64_kB()

Test that reading file content fails for files larger than 64kB in CWL v1.0.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v_1_2_load_inputfile_with_format()

Test that File object with the format field is correctly loaded with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v_1_2_load_inputfile_with_nested_array()

Test that nested arrays are preserved when loading an input file with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v_1_2_load_inputfile_with_requirements()

Test that an input file with the cwl:requirements directive is correctly loaded with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v_1_2_load_inputfile_with_secondary_files()

Test that secondary files are treated as objects when loading an input file with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_stdout_to_file()

Test that stdout shortcut is converted to stdout parameter with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_stdout_to_file_with_binding()

Test that outputBinding is not allowed with stdout shortcut with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_stdout_to_file_preserve_original()

Test that stdout parameter prevails on stdout shortcut with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_stderr_to_file()

Test that stderr shortcut is converted to stderr parameter with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_stderr_to_file_with_binding()

Test that outputBinding is not allowed with stderr shortcut with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_stderr_to_file_preserve_original()

Test that stderr parameter prevails on stdout shortcut with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_stdin_to_file()

Test that stdin shortcut is converted to stdin parameter with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_stdin_to_file_with_binding()

Test that inputBinding is not allowed with stdin shortcut with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_stdin_to_file_fail_with_original()

Test that stdin shortcut fails when stdin parameter is defined with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_type_compare_list()

Test that the type comparison works correctly a list type with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_type_compare_record()

Test that the type comparison works correctly a record type with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_type_for_source()

Test that the type is correctly inferred from a source id with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_type_for_source_with_id()

Test that the type is correctly inferred from a source id with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_type_for_stdout()

Test that the stdout type is correctly matched with the File type in CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_type_output_source_record()

Test that the type is correctly inferred from a record output source with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_type_for_output_source_with_single_scatter_step()

Test that the type is correctly inferred from a single scatter step with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_type_for_output_source_with_nested_crossproduct_scatter_step()

Test that the type is correctly inferred from a nested_crossproduct scatter step with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_type_for_output_source_with_flat_crossproduct_scatter_step()

Test that the type is correctly inferred from a flat_crossproduct scatter step with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_type_for_source_with_multiple_entries_merge_nested()

Test that the type is correctly inferred from a list of source ids and merge_nested with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_type_for_source_with_multiple_entries_merge_flattened()

Test that the type is correctly inferred from a list of source ids and merge_flattened with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_type_for_source_with_single_entry_merge_nested()

Test that the type is correctly inferred from a single source id and merge_nested with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_type_for_source_with_single_entry_merge_flattened()

Test that the type is correctly inferred from a single source id and merge_flattened with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_type_for_source_with_multiple_entries_first_non_null()

Test that the type is correctly inferred from a list of source ids and first_non_null with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_type_for_source_with_multiple_entries_the_only_non_null()

Test that the type is correctly inferred from a list of source ids and the_only_non_null with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_type_for_source_with_multiple_entries_all_non_null()

Test that the type is correctly inferred from a list of source ids and all_non_null with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_type_for_source_with_single_entry_first_non_null()

Test that the type is correctly inferred from a single source id and first_non_null with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_type_for_source_with_single_entry_the_only_non_null()

Test that the type is correctly inferred from a single source id and the_only_non_null with CWL v1.2.

Return type:: None

cwl_utils.tests.test_parser_utils.test_v1_2_type_for_source_with_single_entry_all_non_null()

Test that the type is correctly inferred from a single source id and all_non_null with CWL v1.2.

Return type:: None