Common Workflow Language reference implementation
Contents:
cwltool Command Line Options
cwltool
environment variables
positional arguments
options
non-execution options
logging configuration
environment variables control
intermediate, temporary, or final output files management
software container engine selection and configuration
dependency resolver configuration
tool resolution
javascript options
execution target selection
Loops
The loop condition
The loop field
Loop output modes
Loop-independent iterations
Provenance capture
Who executed the workflow?
CWLProv folder structure
Research Object manifest
PROV profile
CWLPROV namespaces
Account who launched cwltool
Starting a workflow
Running workflow steps
Data inputs (usage)
Data outputs (generation)
Ending the workflow
Python version support policy
Process generator
Example runs
API Reference
cwltool
Submodules
cwltool.__main__
cwltool.argparser
cwltool.builder
cwltool.checker
cwltool.command_line_tool
cwltool.context
cwltool.cuda
cwltool.cwlprov
cwltool.cwlrdf
cwltool.cwlviewer
cwltool.docker
cwltool.docker_id
cwltool.env_to_stdout
cwltool.errors
cwltool.executors
cwltool.factory
cwltool.flatten
cwltool.job
cwltool.load_tool
cwltool.loghandler
cwltool.main
cwltool.mpi
cwltool.mutation
cwltool.pack
cwltool.pathmapper
cwltool.process
cwltool.procgenerator
cwltool.resolver
cwltool.run_job
cwltool.secrets
cwltool.singularity
cwltool.singularity_utils
cwltool.software_requirements
cwltool.stdfsaccess
cwltool.subgraph
cwltool.task_queue
cwltool.udocker
cwltool.update
cwltool.utils
cwltool.validate_js
cwltool.workflow
cwltool.workflow_job
Attributes
Package Contents
__author__
CWL_CONTENT_TYPES
Common Workflow Language reference implementation
API Reference
cwltool
cwltool.__main__
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cwltool.__main__
Default entrypoint for the cwltool module.