FlowGenericProblem.hpp

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// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
// vi: set et ts=4 sw=4 sts=4:
/*
  This file is part of the Open Porous Media project (OPM).
 
  OPM is free software: you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
  the Free Software Foundation, either version 2 of the License, or
  (at your option) any later version.
 
  OPM is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  GNU General Public License for more details.
 
  You should have received a copy of the GNU General Public License
  along with OPM.  If not, see <http://www.gnu.org/licenses/>.
 
  Consult the COPYING file in the top-level source directory of this
  module for the precise wording of the license and the list of
  copyright holders.
*/
#ifndef OPM_FLOW_GENERIC_PROBLEM_HPP
#define OPM_FLOW_GENERIC_PROBLEM_HPP
 
#include <opm/material/common/UniformXTabulated2DFunction.hpp>
#include <opm/material/common/Tabulated1DFunction.hpp>
 
#include <opm/simulators/flow/SolutionContainers.hpp>
 
#include <array>
#include <cstddef>
#include <functional>
#include <string>
#include <vector>
 
namespace Dune {
class ParameterTree;
}
 
namespace Opm {
 
class Deck;
class EclipseState;
class Schedule;
template<typename Grid, typename GridView> class LookUpData;

template<class GridView, class FluidSystem>
class FlowGenericProblem
{
public:
    using Scalar = typename FluidSystem::Scalar;
    using TabulatedTwoDFunction = UniformXTabulated2DFunction<Scalar>;
    using TabulatedFunction = Tabulated1DFunction<Scalar>;
 
    struct RockParams {
        Scalar referencePressure;
        Scalar compressibility;
    };
 
    FlowGenericProblem(const EclipseState& eclState,
                       const Schedule& schedule,
                       const GridView& gridView);
 
 
    static FlowGenericProblem serializationTestObject(const EclipseState& eclState,
                                                      const Schedule& schedule,
                                                      const GridView& gridView);

    static std::string helpPreamble(int,
                                    const char **argv);

    static std::string briefDescription();

    static void setBriefDescription(const std::string& msg)
    { briefDescription_ = msg; }

    Scalar maxWaterSaturation(unsigned globalDofIdx) const;

    Scalar minOilPressure(unsigned globalDofIdx) const;

    Scalar overburdenPressure(unsigned elementIdx) const;

    Scalar referencePorosity(unsigned elementIdx, unsigned timeIdx) const
    { return referencePorosity_[timeIdx][elementIdx]; }
 

    Scalar rockFraction(unsigned elementIdx, unsigned timeIdx) const {
        return rockFraction_[timeIdx][elementIdx];
    };

    Scalar rockBiotComp(unsigned elementIdx) const;

    Scalar lame(unsigned elementIdx) const;

    Scalar biotCoeff(unsigned elementIdx) const;

    void setPorosity(Scalar poro, unsigned elementIdx, unsigned timeIdx = 0)
    { referencePorosity_[timeIdx][elementIdx] = poro; }

    Scalar solventSaturation(unsigned elemIdx) const;

    Scalar solventRsw(unsigned elemIdx) const;

    Scalar polymerConcentration(unsigned elemIdx) const;

    // TODO: remove this function if not called
    Scalar polymerMolecularWeight(const unsigned elemIdx) const;

    Scalar microbialConcentration(unsigned elemIdx) const;

    Scalar oxygenConcentration(unsigned elemIdx) const;

    Scalar ureaConcentration(unsigned elemIdx) const;

    Scalar biofilmVolumeFraction(unsigned elemIdx) const;

    Scalar calciteVolumeFraction(unsigned elemIdx) const;

    unsigned pvtRegionIndex(unsigned elemIdx) const;
 
//    const std::vector<int>& pvtRegionArray() const
//    { return pvtnum_; }

    unsigned satnumRegionIndex(unsigned elemIdx) const;

    unsigned miscnumRegionIndex(unsigned elemIdx) const;

    unsigned plmixnumRegionIndex(unsigned elemIdx) const;

    Scalar maxPolymerAdsorption(unsigned elemIdx) const;

    Scalar rockCompressibility(unsigned globalSpaceIdx) const;

    Scalar porosity(unsigned globalSpaceIdx, unsigned timeIdx) const;
 
    bool vapparsActive(int episodeIdx) const;
 
    int numPressurePointsEquil() const
    { return numPressurePointsEquil_; }
 
    bool operator==(const FlowGenericProblem& rhs) const;
 
    template<class Serializer>
    void serializeOp(Serializer& serializer)
    {
        serializer(maxOilSaturation_);
        serializer(polymer_);
        serializer(maxWaterSaturation_);
        serializer(minRefPressure_);
        serializer(overburdenPressure_);
        serializer(solventSaturation_);
        serializer(solventRsw_);
        serializer(bioeffects_);
    }
 
protected:
    void initFluidSystem_();

    bool shouldWriteOutput() const
    { return true; }

    bool shouldWriteRestartFile() const
    { return false; }
 
    bool beginEpisode_(bool enableExperiments,
                       int episodeIdx);
    void beginTimeStep_(bool enableExperiments,
                        int episodeIdx,
                        int timeStepIndex,
                        Scalar startTime,
                        Scalar time,
                        Scalar timeStepSize,
                        Scalar endTime);
 
    void readRockParameters_(const std::vector<Scalar>& cellCenterDepths,
                             std::function<std::array<int,3>(const unsigned)> ijkIndex);
    void readRockCompactionParameters_();
 
    void readBlackoilExtentionsInitialConditions_(std::size_t numDof,
                                                  bool enableSolvent,
                                                  bool enablePolymer,
                                                  bool enablePolymerMolarWeight,
                                                  bool enableBioeffects,
                                                  bool enableMICP);
 
    void updatePvtnum_();
    void updateSatnum_();
    void updateMiscnum_();
    void updatePlmixnum_();
 
    const EclipseState& eclState_;
    const Schedule& schedule_;
    const GridView& gridView_;
 
    static inline std::string briefDescription_;
    std::array<std::vector<Scalar>, 2> referencePorosity_;
    std::array<std::vector<Scalar>, 2> rockFraction_;
 
    std::vector<int> pvtnum_;
    std::vector<unsigned short> satnum_;
    std::vector<unsigned short> miscnum_;
    std::vector<unsigned short> plmixnum_;
 
    std::vector<RockParams> rockParams_;
    std::vector<unsigned short> rockTableIdx_;
    std::vector<TabulatedTwoDFunction> rockCompPoroMultWc_;
    std::vector<TabulatedTwoDFunction> rockCompTransMultWc_;
    std::vector<TabulatedFunction> rockCompPoroMult_;
    std::vector<TabulatedFunction> rockCompTransMult_;
    std::vector<Scalar> rockCompTransMultVal_;
 
    PolymerSolutionContainer<Scalar> polymer_;
    std::vector<Scalar> maxOilSaturation_;
    std::vector<Scalar> maxWaterSaturation_;
    std::vector<Scalar> minRefPressure_;
    std::vector<Scalar> overburdenPressure_;
    std::vector<Scalar> solventSaturation_;
    std::vector<Scalar> solventRsw_;
    BioeffectsSolutionContainer<Scalar> bioeffects_;
    CO2H2SolutionContainer<Scalar> CO2H2_;
 
    // time stepping parameters
    bool enableTuning_;
    Scalar initialTimeStepSize_;
    Scalar maxTimeStepAfterWellEvent_;
 
    // equilibration parameters
    int numPressurePointsEquil_;
 
    bool enableDriftCompensation_;
    bool enableDriftCompensationTemp_{false};
    bool explicitRockCompaction_;
 
    // To lookup origin cell indices
    using Grid = std::remove_cv_t< typename std::remove_reference<decltype(gridView_.grid())>::type>;
    using LookUpData = Opm::LookUpData<Grid,GridView>;
    const LookUpData lookUpData_;
 
    // \brief Function to assign the origin cell index on level zero, for a cell on the leaf grid view.
    //
    // For CpGrid with local grid refinement, the field property of a cell on the leaf
    // is inherited from its parent or equivalent (when has no parent) cell on level zero.
    std::function<unsigned(unsigned)> lookupIdxOnLevelZeroAssigner_()
    {
        return [this](unsigned elemIdx) { return lookUpData_.template getFieldPropIdx<Grid>(elemIdx);};
    }
 
private:
    template<class T>
    void updateNum(const std::string& name, std::vector<T>& numbers, std::size_t num_regions);
};
 
} // namespace Opm
 
#endif // OPM_FLOW_GENERIC_PROBLEM_HPP