Meta-Analysis Package for R


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Documentation for package ‘metafor’ version 2.4-0

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A B C D E F G H I L M N P Q R S T U V W

metafor-package metafor: A Meta-Analysis Package for R

-- A --

addpoly Add Polygons to Forest Plots
addpoly.default Add Polygons to Forest Plots (Default Method)
addpoly.rma Add Polygons to Forest Plots (Method for 'rma' Objects)
AIC.rma Fit Statistics and Information Criteria for 'rma' Objects
anova.rma Likelihood Ratio and Wald-Type Tests for 'rma' Objects

-- B --

baujat Baujat Plots for 'rma' Objects
baujat.rma Baujat Plots for 'rma' Objects
BIC.rma Fit Statistics and Information Criteria for 'rma' Objects
bldiag Construct Block Diagonal Matrix
blup Best Linear Unbiased Predictions for 'rma.uni' Objects
blup.rma.uni Best Linear Unbiased Predictions for 'rma.uni' Objects

-- C --

coef.permutest.rma.uni Extract the Model Coefficient Table from 'permutest.rma.uni' Objects
coef.rma Extract the Model Coefficients and Coefficient Table from 'rma' and 'summary.rma' Objects
coef.summary.rma Extract the Model Coefficients and Coefficient Table from 'rma' and 'summary.rma' Objects
confint.rma.glmm Confidence Intervals for 'rma' Objects
confint.rma.mh Confidence Intervals for 'rma' Objects
confint.rma.mv Confidence Intervals for 'rma' Objects
confint.rma.peto Confidence Intervals for 'rma' Objects
confint.rma.uni Confidence Intervals for 'rma' Objects
contrmat Construct Contrast Matrix for Two-Group Comparisons
cooks.distance.rma.mv Outlier and Influential Case Diagnostics for 'rma.mv' Objects
cooks.distance.rma.uni Outlier and Influential Case Diagnostics for 'rma.uni' Objects
cumul Cumulative Meta-Analysis for 'rma' Objects
cumul.rma.mh Cumulative Meta-Analysis for 'rma' Objects
cumul.rma.peto Cumulative Meta-Analysis for 'rma' Objects
cumul.rma.uni Cumulative Meta-Analysis for 'rma' Objects

-- D --

dat.bangertdrowns2004 Studies on the Effectiveness of Writing-to-Learn Interventions
dat.bcg Studies on the Effectiveness of the BCG Vaccine Against Tuberculosis
dat.begg1989 Studies on Bone-Marrow Transplantation versus Chemotherapy for the Treatment of Leukemia
dat.berkey1998 Studies on Treatments for Periodontal Disease
dat.bonett2010 Studies on the Reliability of the CES-D Scale
dat.bourassa1996 Studies on the Association between Handedness and Eye-Dominance
dat.colditz1994 Studies on the Effectiveness of the BCG Vaccine Against Tuberculosis
dat.collins1985a Studies on the Treatment of Upper Gastrointestinal Bleeding by a Histamine H2 Antagonist
dat.collins1985b Studies on the Effects of Diuretics in Pregnancy
dat.curtis1998 Studies on the Effects of Elevated CO2 Levels on Woody Plant Mass
dat.debruin2009 Studies on Standard Care Quality and HAART-Adherence
dat.egger2001 Studies on the Effectiveness of Intravenous Magnesium in Acute Myocardial Infarction
dat.fine1993 Studies on Radiation Therapy with or without Adjuvant Chemotherapy in Patients with Malignant Gliomas
dat.gibson2002 Studies on the Effectiveness of Self-Management Education and Regular Medical Review for Adults with Asthma
dat.graves2010 Studies on the Effectiveness of Injected Cholera Vaccines
dat.hackshaw1998 Studies on Lung Cancer Risk from ETS Exposure
dat.hart1999 Studies on the Effectiveness of Warfarin for Preventing Strokes
dat.hasselblad1998 Studies on the Effectiveness of Counseling for Smoking Cessation
dat.hine1989 Studies on Prophylactic Use of Lidocaine After a Heart Attack
dat.ishak2007 Studies on Deep-Brain Stimulation
dat.konstantopoulos2011 Studies on the Effects of Modified School Calendars on Student Achievement
dat.laopaiboon2015 Studies on the Effectiveness of Azithromycin for Treating Lower Respiratory Tract Infections
dat.lee2004 Studies on Acupoint P6 Stimulation for Preventing Nausea
dat.li2007 Studies on the Effectiveness of Intravenous Magnesium in Acute Myocardial Infarction
dat.linde2005 Studies on the Effectiveness of St. John's Wort for Treating Depression
dat.mcdaniel1994 Studies on the Validity of Employment Interviews
dat.molloy2014 Studies on the Relationship between Conscientiousness and Medication Adherence
dat.nielweise2007 Studies on Anti-Infective-Treated Central Venous Catheters for Prevention of Catheter-Related Bloodstream Infections
dat.nielweise2008 Studies on Anti-Infective-Treated Central Venous Catheters for Prevention of Catheter-Related Bloodstream Infections
dat.normand1999 Studies on the Length of Hospital Stay of Stroke Patients
dat.pagliaro1992 Studies on the Effectiveness of Nonsurgical Treatments in Cirrhosis
dat.pignon2000 Studies on the Effectiveness of Locoregional Treatment plus Chemotherapy for Head and Neck Squamous-Cell Carcinoma
dat.pritz1997 Studies on the Effectiveness of Hyperdynamic Therapy for Treating Cerebral Vasospasm
dat.raudenbush1985 Studies on Assessing the Effects of Teacher Expectations on Pupil IQ
dat.riley2003 Studies on MYC-N as a Prognostic Marker for Neuroblastoma
dat.senn2013 Studies on the Effectiveness of Glucose-Lowering Agents
dat.yusuf1985 Studies of Beta Blockers During and After Myocardial Infarction
deviance.rma Fit Statistics and Information Criteria for 'rma' Objects
df.residual.rma Fit Statistics and Information Criteria for 'rma' Objects
dfbetas.rma.mv Outlier and Influential Case Diagnostics for 'rma.mv' Objects
dfbetas.rma.uni Outlier and Influential Case Diagnostics for 'rma.uni' Objects

-- E --

escalc Calculate Effect Sizes and Outcome Measures

-- F --

fitstats Fit Statistics and Information Criteria for 'rma' Objects
fitstats.rma Fit Statistics and Information Criteria for 'rma' Objects
fitted.rma Fitted Values for 'rma' Objects
forest Forest Plots
forest.cumul.rma Forest Plots (Method for 'cumul.rma' Objects)
forest.default Forest Plots (Default Method)
forest.rma Forest Plots (Method for 'rma' Objects)
formula.rma Model Formulae for 'rma' Objects
fsn Fail-Safe N Analysis (File Drawer Analysis)
funnel Funnel Plots
funnel.default Funnel Plots
funnel.rma Funnel Plots

-- G --

galbraith Radial (Galbraith) Plots for 'rma' Objects
gosh GOSH Plots for 'rma' Objects
gosh.rma GOSH Plots for 'rma' Objects

-- H --

hatvalues.rma.mv Outlier and Influential Case Diagnostics for 'rma.mv' Objects
hatvalues.rma.uni Outlier and Influential Case Diagnostics for 'rma.uni' Objects
hc Meta-Analysis based on the Method by Henmi and Copas (2010)
hc.rma.uni Meta-Analysis based on the Method by Henmi and Copas (2010)

-- I --

influence.rma.mv Outlier and Influential Case Diagnostics for 'rma.mv' Objects
influence.rma.uni Outlier and Influential Case Diagnostics for 'rma.uni' Objects

-- L --

labbe L'Abbe Plots for 'rma' Objects
labbe.rma L'Abbe Plots for 'rma' Objects
leave1out Leave-One-Out Diagnostics for 'rma' Objects
leave1out.rma.mh Leave-One-Out Diagnostics for 'rma' Objects
leave1out.rma.peto Leave-One-Out Diagnostics for 'rma' Objects
leave1out.rma.uni Leave-One-Out Diagnostics for 'rma' Objects
llplot Likelihood Plot of a Parameter Corresponding to an Effect Size or Outcome Measure
logLik.rma Fit Statistics and Information Criteria for 'rma' Objects

-- M --

metafor metafor: A Meta-Analysis Package for R
metafor.news Read News File of the Metafor Package
model.matrix.rma Model Matrix for 'rma' Objects

-- N --

nobs.rma Fit Statistics and Information Criteria for 'rma' Objects

-- P --

permutest Permutation Tests for 'rma.uni' Objects
permutest.rma.uni Permutation Tests for 'rma.uni' Objects
plot.cumul.rma Plot Method for 'cumul.rma' Objects
plot.gosh.rma Plot Method for 'gosh.rma' Objects
plot.infl.rma.uni Plot Method for 'infl.rma.uni' Objects
plot.profile.rma Profile Plots for 'rma' Objects
plot.rma Plot Method for 'rma' Objects
plot.rma.glmm Plot Method for 'rma' Objects
plot.rma.mh Plot Method for 'rma' Objects
plot.rma.peto Plot Method for 'rma' Objects
plot.rma.uni Plot Method for 'rma' Objects
predict.rma Predicted Values for 'rma' Objects
print.anova.rma Print Method for 'anova.rma' Objects
print.confint.rma Print Methods for 'confint.rma' and 'list.confint.rma' Objects
print.escalc Print and Summary Methods for 'escalc' Objects
print.fsn Print Method for 'fsn' Objects
print.gosh.rma Print Method for 'gosh.rma' Objects
print.hc.rma.uni Print Method for 'hc.rma.uni' Objects
print.infl.rma.uni Outlier and Influential Case Diagnostics for 'rma.uni' Objects
print.list.confint.rma Print Methods for 'confint.rma' and 'list.confint.rma' Objects
print.list.rma Print method for 'list.rma' Objects
print.permutest.rma.uni Print Method for 'permutest.rma.uni' Objects
print.profile.rma Profile Plots for 'rma' Objects
print.ranktest.rma Print Method for 'ranktest.rma' Objects
print.regtest.rma Print Method for 'regtest.rma' Objects
print.rma Print and Summary Methods for 'rma' Objects
print.rma.glmm Print and Summary Methods for 'rma' Objects
print.rma.mh Print and Summary Methods for 'rma' Objects
print.rma.mv Print and Summary Methods for 'rma' Objects
print.rma.peto Print and Summary Methods for 'rma' Objects
print.rma.uni Print and Summary Methods for 'rma' Objects
print.robust.rma Print Method for 'robust.rma' Objects
print.summary.rma Print and Summary Methods for 'rma' Objects
profile.rma.mv Profile Plots for 'rma' Objects
profile.rma.uni Profile Plots for 'rma' Objects

-- Q --

qqnorm.rma.glmm Normal QQ Plots for 'rma' Objects
qqnorm.rma.mh Normal QQ Plots for 'rma' Objects
qqnorm.rma.mv Normal QQ Plots for 'rma' Objects
qqnorm.rma.peto Normal QQ Plots for 'rma' Objects
qqnorm.rma.uni Normal QQ Plots for 'rma' Objects

-- R --

radial Radial (Galbraith) Plots for 'rma' Objects
radial.rma Radial (Galbraith) Plots for 'rma' Objects
ranef Best Linear Unbiased Predictions for 'rma.uni' and 'rma.mv' Objects
ranef.rma.mv Best Linear Unbiased Predictions for 'rma.uni' and 'rma.mv' Objects
ranef.rma.uni Best Linear Unbiased Predictions for 'rma.uni' and 'rma.mv' Objects
ranktest Rank Correlation Test for Funnel Plot Asymmetry
ranktest.default Rank Correlation Test for Funnel Plot Asymmetry
ranktest.rma Rank Correlation Test for Funnel Plot Asymmetry
regtest Regression Test for Funnel Plot Asymmetry
regtest.default Regression Test for Funnel Plot Asymmetry
regtest.rma Regression Test for Funnel Plot Asymmetry
replmiss Replace Missing Values in a Vector
reporter Dynamically Generated Analysis Reports for 'rma.uni' Objects
reporter.rma.uni Dynamically Generated Analysis Reports for 'rma.uni' Objects
residuals.rma Residual Values based on 'rma' Objects
rma Meta-Analysis via Linear (Mixed-Effects) Models
rma.glmm Meta-Analysis via Generalized Linear (Mixed-Effects) Models
rma.mh Meta-Analysis via the Mantel-Haenszel Method
rma.mv Meta-Analysis via Multivariate/Multilevel Linear (Mixed-Effects) Models
rma.peto Meta-Analysis via Peto's Method
rma.uni Meta-Analysis via Linear (Mixed-Effects) Models
robust (Cluster) Robust Tests and Confidence Intervals for 'rma' Objects
robust.rma.mv (Cluster) Robust Tests and Confidence Intervals for 'rma' Objects
robust.rma.uni (Cluster) Robust Tests and Confidence Intervals for 'rma' Objects
rstandard.rma.mh Residual Values based on 'rma' Objects
rstandard.rma.mv Residual Values based on 'rma' Objects
rstandard.rma.peto Residual Values based on 'rma' Objects
rstandard.rma.uni Residual Values based on 'rma' Objects
rstudent.rma.mh Residual Values based on 'rma' Objects
rstudent.rma.mv Residual Values based on 'rma' Objects
rstudent.rma.peto Residual Values based on 'rma' Objects
rstudent.rma.uni Residual Values based on 'rma' Objects

-- S --

simulate.rma Simulate Method for 'rma' Objects
summary.escalc Print and Summary Methods for 'escalc' Objects
summary.rma Print and Summary Methods for 'rma' Objects

-- T --

to.long Convert Data from Vector to Long Format
to.table Convert Data from Vector to Table Format
to.wide Convert Data from a Long to a Wide Format
transf Transformation Function
transf.abt Transformation Function
transf.ahw Transformation Function
transf.arcsin Transformation Function
transf.exp.int Transformation Function
transf.iabt Transformation Function
transf.iahw Transformation Function
transf.iarcsin Transformation Function
transf.iirft Transformation Function
transf.ilogit Transformation Function
transf.ilogit.int Transformation Function
transf.ipft Transformation Function
transf.ipft.hm Transformation Function
transf.irft Transformation Function
transf.isqrt Transformation Function
transf.logit Transformation Function
transf.pft Transformation Function
transf.rtoz Transformation Function
transf.ztor Transformation Function
transf.ztor.int Transformation Function
trimfill Trim and Fill Analysis for 'rma.uni' Objects
trimfill.rma.uni Trim and Fill Analysis for 'rma.uni' Objects

-- U --

update.rma Model Updating for 'rma' Objects

-- V --

vcov.rma Extract Various Types of Variance-Covariance Matrices from 'rma' Objects
vif Variance Inflation Factors for 'rma' Objects
vif.rma Variance Inflation Factors for 'rma' Objects

-- W --

weights.rma.glmm Compute Weights for 'rma' Objects
weights.rma.mh Compute Weights for 'rma' Objects
weights.rma.mv Compute Weights for 'rma' Objects
weights.rma.peto Compute Weights for 'rma' Objects
weights.rma.uni Compute Weights for 'rma' Objects