Package org.snpeff.nmer
Class NmerCountWc
java.lang.Object
org.snpeff.nmer.NmerCount
org.snpeff.nmer.NmerCountWc
- All Implemented Interfaces:
Serializable
Create a counter that can count Nmers as well as their WC complements
That means that given an Nmer, the nmer and the Watson-Crick complement are counted the same.
How is done: Given an nmer
- Calculate WC complement: nmerWc = WC(nmer)
- Count the minimum of both nmer.count( min(nmer, nmerWc) )
It works with other counters (NmerCountBit, NmerCountByte, NmerCountInt)
- Author:
- pcingola
- See Also:
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Field Summary
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Constructor Summary
Constructors -
Method Summary
Methods inherited from class org.snpeff.nmer.NmerCount
avg, countLessThan, get, get, max, max, random, size, toString, toStringAll, toStringAll, total