Uses of Enum Class
org.snpeff.snpEffect.VariantEffect.EffectImpact
Packages that use VariantEffect.EffectImpact
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Uses of VariantEffect.EffectImpact in org.snpeff.interval.codonChange
Methods in org.snpeff.interval.codonChange with parameters of type VariantEffect.EffectImpactModifier and TypeMethodDescriptionprotected VariantEffect
CodonChange.effectNoCodon
(Marker marker, EffectType effectType, VariantEffect.EffectImpact effectImpact) -
Uses of VariantEffect.EffectImpact in org.snpeff.snpEffect
Fields in org.snpeff.snpEffect declared as VariantEffect.EffectImpactFields in org.snpeff.snpEffect with type parameters of type VariantEffect.EffectImpactModifier and TypeFieldDescriptionprotected List<VariantEffect.EffectImpact>
VariantEffect.effectImpacts
Methods in org.snpeff.snpEffect that return VariantEffect.EffectImpactModifier and TypeMethodDescriptionEffectType.effectImpact()
Return effect impactVariantEffect.getEffectImpact()
Return impact of this effectVariantEffects.highestImpact
(String trId) Find the highest impact effect for transcript 'trId'static VariantEffect.EffectImpact
Returns the enum constant of this class with the specified name.static VariantEffect.EffectImpact[]
VariantEffect.EffectImpact.values()
Returns an array containing the constants of this enum class, in the order they are declared.Methods in org.snpeff.snpEffect with parameters of type VariantEffect.EffectImpactModifier and TypeMethodDescriptionvoid
VariantEffects.add
(Variant variant, Marker marker, EffectType effectType, VariantEffect.EffectImpact effectImpact, String message) Add an effectvoid
VariantEffect.addEffectImpact
(VariantEffect.EffectImpact effectImpact) boolean
VariantEffect.hasEffectImpact
(VariantEffect.EffectImpact effectImpact) void
VariantEffect.set
(Marker marker, EffectType effectType, VariantEffect.EffectImpact effectImpact, String message) void
VariantEffect.setEffectImpact
(VariantEffect.EffectImpact effectImpact) Constructors in org.snpeff.snpEffect with parameters of type VariantEffect.EffectImpactModifierConstructorDescriptionVariantEffect
(Variant variant, Marker marker, EffectType effectType, VariantEffect.EffectImpact effectImpact, String codonsOld, String codonsNew, int codonNum, int codonIndex, int cDnaPos) -
Uses of VariantEffect.EffectImpact in org.snpeff.vcf
Methods in org.snpeff.vcf that return VariantEffect.EffectImpactMethods in org.snpeff.vcf with parameters of type VariantEffect.EffectImpact