Package org.snpeff.interval.codonChange
Class CodonChangeInv
java.lang.Object
org.snpeff.interval.codonChange.CodonChange
org.snpeff.interval.codonChange.CodonChangeInv
Calculate codon changes produced by an inversion
- Author:
- pcingola
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Field Summary
Fields inherited from class org.snpeff.interval.codonChange.CodonChange
CODON_SIZE, showCodonChange
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Constructor Summary
ConstructorsConstructorDescriptionCodonChangeInv
(Variant variant, Transcript transcript, VariantEffects variantEffects) -
Method Summary
Methods inherited from class org.snpeff.interval.codonChange.CodonChange
additionalEffect, cdsBaseNumber, codonChange, codonsAlt, codonsRef, codonsRef, effect, effectNoCodon, effectNoCodon, factory, intersectsExons, netCdsChange, toString
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Constructor Details
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CodonChangeInv
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Method Details
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codonChange
public void codonChange()Description copied from class:CodonChange
Calculate a list of codon changes- Overrides:
codonChange
in classCodonChange
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