Package org.snpeff.interval.codonChange
Class CodonChangeInterval
java.lang.Object
org.snpeff.interval.codonChange.CodonChange
org.snpeff.interval.codonChange.CodonChangeInterval
Calculate codon changes produced by a Interval
Note: An interval does not produce any effect.
- Author:
- pcingola
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Field Summary
Fields inherited from class org.snpeff.interval.codonChange.CodonChange
CODON_SIZE, showCodonChange
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Constructor Summary
ConstructorsConstructorDescriptionCodonChangeInterval
(Variant variant, Transcript transcript, VariantEffects varEffects) -
Method Summary
Modifier and TypeMethodDescriptionprotected boolean
codonChange
(Exon exon) Interval is not a variant, nothing to doMethods inherited from class org.snpeff.interval.codonChange.CodonChange
additionalEffect, cdsBaseNumber, codonChange, codonsAlt, codonsRef, codonsRef, effect, effectNoCodon, effectNoCodon, factory, intersectsExons, netCdsChange, toString
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Constructor Details
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CodonChangeInterval
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Method Details
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codonChange
Interval is not a variant, nothing to do- Overrides:
codonChange
in classCodonChange
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