Package org.snpeff.binseq
Class DnaAndQualitySequenceWithId
java.lang.Object
org.snpeff.binseq.BinarySequence
org.snpeff.binseq.DnaAndQualitySequence
org.snpeff.binseq.DnaAndQualitySequenceWithId
- All Implemented Interfaces:
Serializable
,Cloneable
,Comparable<BinarySequence>
DnaAndQualitySequence with an ID
- Author:
- pcingola
- See Also:
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Constructor Summary
ConstructorsConstructorDescriptionDnaAndQualitySequenceWithId
(String seqStr) DnaAndQualitySequenceWithId
(String seqStr, String qualityStr, org.biojava.nbio.genome.io.fastq.FastqVariant type) -
Method Summary
Modifier and TypeMethodDescriptionstatic DnaAndQualitySequenceWithId
empty()
long
getId()
protected void
readDataStream
(DataInputStream dataInStream) Read data in binary formatvoid
write
(DataOutputStream dataOutStream) Write data in binary formatMethods inherited from class org.snpeff.binseq.DnaAndQualitySequence
compareTo, getBase, getCode, getCoder, getCodes, getQuality, getQuality, getSequence, hashCode, indexOf, lastIndexOf, length, overlap, read, reverseWc, set, set, toString
Methods inherited from class org.snpeff.binseq.BinarySequence
clone, setQuality
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Constructor Details
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DnaAndQualitySequenceWithId
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DnaAndQualitySequenceWithId
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Method Details
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empty
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getId
public long getId() -
readDataStream
Read data in binary format- Overrides:
readDataStream
in classDnaAndQualitySequence
- Parameters:
dataOutStream
-- Throws:
IOException
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write
Write data in binary format- Overrides:
write
in classDnaAndQualitySequence
- Parameters:
dataOutStream
-- Throws:
IOException
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