Uses of Class
org.snpeff.codons.CodonTable
Packages that use CodonTable
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Uses of CodonTable in org.snpeff.codons
Methods in org.snpeff.codons that return CodonTableModifier and TypeMethodDescriptionGet a codon table by nameGet default genome-wide codon tableGet a codon table WARNING: It will return the standard codon table if nothing if foundMethods in org.snpeff.codons that return types with arguments of type CodonTableMethods in org.snpeff.codons with parameters of type CodonTableModifier and TypeMethodDescriptionvoid
CodonTables.add
(CodonTable codonTable) Add a codon tablevoid
CodonTables.set
(Genome genome, CodonTable codonTable) Set a codon table for a all chromosomes in a genome I.e.: Default genome-wide chromosome tablevoid
CodonTables.set
(Genome genome, Chromosome chr, CodonTable codonTable) Set a codon table for a given genome & chromosome -
Uses of CodonTable in org.snpeff.interval
Methods in org.snpeff.interval that return CodonTableModifier and TypeMethodDescriptionMarker.codonTable()
Get a suitable codon tableChromosome.getCodonTable()
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Uses of CodonTable in org.snpeff.snpEffect
Constructors in org.snpeff.snpEffect with parameters of type CodonTable