Package org.snpeff.motif
Class MotifLogo
java.lang.Object
org.snpeff.motif.MotifLogo
Create a DNA logo for a PWM
References:
- See WebLogo http://weblogo.berkeley.edu/
- "WebLogo: A Sequence Logo Generator"
- Author:
- pcingola
-
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionstatic double
log2
(double p) Log base 2toStringHtml
(int width, int maxHeight, EffectType efectType) Return an HTML string that represents the motif.
-
Constructor Details
-
MotifLogo
-
-
Method Details
-
log2
public static double log2(double p) Log base 2 -
toStringHtml
Return an HTML string that represents the motif.
-