Package org.snpeff.overlap
Class OverlapDnaSeq
-
Field Summary
Fields -
Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionint
int
overlap
(DnaSequence seq1, DnaSequence seq2) Calculate the best overlap between two sequencesvoid
setMinOverlap
(int minOverlap) Methods inherited from class org.snpeff.overlap.Overlap
getBestOffset, getBestScore
-
Field Details
-
debug
public static boolean debug
-
-
Constructor Details
-
OverlapDnaSeq
public OverlapDnaSeq()
-
-
Method Details
-
getMinOverlap
public int getMinOverlap() -
overlap
Description copied from class:Overlap
Calculate the best overlap between two sequences- Specified by:
overlap
in classOverlap<DnaSequence>
- Returns:
-
setMinOverlap
public void setMinOverlap(int minOverlap)
-