Package org.snpeff.probablility


package org.snpeff.probablility
  • Classes
    Class
    Description
    Calculate binomial distribution References http://en.wikipedia.org/wiki/Binomial_distribution
    Calculate a Cochran-Armitage test Reference: http://en.wikipedia.org/wiki/Cochran-Armitage_test_for_trend The trend test is applied when the data take the form of a 2 x k contingency table.
    Calculate Fisher's exact test (based on hypergeometric distribution)
    Calculate hypergeometric distribution using an optimized algorithm that avoids problems with big factorials.
    Calculate Normal distribution (PDF & CDF) using more precision if required
    Create random markers using a uniform distribution
    Calculate rank sum probability distribution function (pdf) and cumulative distribution function (cdf).
    Calculate rank sum probability distribution function (pdf) and cumulative distribution function (cdf).
    Calculate rank sum probability distribution function (pdf) and cumulative distribution function (cdf).