Package org.snpeff.stats
Class VcfStats
java.lang.Object
org.snpeff.stats.VcfStats
- All Implemented Interfaces:
SamplingStats<VcfEntry>
VCF statistics: These are statisticas at VCF line (i.e. VCFEntry) level, so these are usually across all samples in a VCF line
- Author:
- pcingola
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Constructor Summary
Constructors -
Method Summary
Modifier and TypeMethodDescriptionint
boolean
hasData()
Does this statistic have any data?void
Analyze one sample
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Constructor Details
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VcfStats
public VcfStats()
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Method Details
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getCountMultiallelic
public int getCountMultiallelic() -
getGenotypeStats
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getQualityStats
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getQualityStatsHistoUrl
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getTsTvStats
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getTsTvStatsKnown
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hasData
public boolean hasData()Description copied from interface:SamplingStats
Does this statistic have any data?- Specified by:
hasData
in interfaceSamplingStats<VcfEntry>
- Returns:
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sample
Description copied from interface:SamplingStats
Analyze one sample- Specified by:
sample
in interfaceSamplingStats<VcfEntry>
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