Package org.snpeff.outputFormatter
Class BedAnnotationOutputFormatter
java.lang.Object
org.snpeff.outputFormatter.OutputFormatter
org.snpeff.outputFormatter.BedOutputFormatter
org.snpeff.outputFormatter.BedAnnotationOutputFormatter
Formats: Show all annotations that intersect the BED input file.
WARNING: In this format, the output are annotations (instead of input intervals)
- Author:
- pcingola
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Constructor Summary
Constructors -
Method Summary
Methods inherited from class org.snpeff.outputFormatter.BedOutputFormatter
endSection, setOutOffset, startSection
Methods inherited from class org.snpeff.outputFormatter.OutputFormatter
add, clone, close, print, printSection, setChrStr, setCommandLineStr, setConfig, setOutputFile, setShowHeader, setSupressOutput, setUseGeneId, setUseHgvs, setUseOicr, setUseSequenceOntology, setVariantEffectResutFilter, setVersion
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Constructor Details
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BedAnnotationOutputFormatter
public BedAnnotationOutputFormatter()
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Method Details
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toString
Show all effects- Overrides:
toString
in classBedOutputFormatter
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toStringHeader
Show header- Overrides:
toStringHeader
in classBedOutputFormatter
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