Uses of Class
org.snpeff.interval.SpliceSite
Packages that use SpliceSite
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Uses of SpliceSite in org.snpeff.interval
Subclasses of SpliceSite in org.snpeff.intervalModifier and TypeClassDescriptionclass
Interval for a splice site acceptor Note: Splice sites donnor are defined as the last 2 bases of an intron Reference: http://en.wikipedia.org/wiki/RNA_splicingclass
A (putative) branch site.class
A (putative) U12 branch site.class
Interval for a splice site donnor Note: Splice sites donnor are defined as the first 2 bases of an intron Reference: http://en.wikipedia.org/wiki/RNA_splicingclass
Interval for a splice site acceptor From Sequence Ontology: A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intron.Methods in org.snpeff.interval that return types with arguments of type SpliceSiteModifier and TypeMethodDescriptionExon.getSpliceSites()
Intron.getSpliceSites()
Transcript.spliceSites()
Methods in org.snpeff.interval with parameters of type SpliceSiteModifier and TypeMethodDescriptionvoid
Exon.add
(SpliceSite ss) Add a splice site to the collectionvoid
Intron.add
(SpliceSite ss) Add a splice site to the collectionvoid
Transcript.add
(SpliceSite spliceSite) Add a SpliceSite