libpappsomspp
Library for mass spectrometry
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filterobopsimodtermname.cpp
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1/*******************************************************************************
2 * Copyright (c) 2015 Olivier Langella <Olivier.Langella@moulon.inra.fr>.
3 *
4 * This file is part of the PAPPSOms++ library.
5 *
6 * PAPPSOms++ is free software: you can redistribute it and/or modify
7 * it under the terms of the GNU General Public License as published by
8 * the Free Software Foundation, either version 3 of the License, or
9 * (at your option) any later version.
10 *
11 * PAPPSOms++ is distributed in the hope that it will be useful,
12 * but WITHOUT ANY WARRANTY; without even the implied warranty of
13 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14 * GNU General Public License for more details.
15 *
16 * You should have received a copy of the GNU General Public License
17 * along with PAPPSOms++. If not, see <http://www.gnu.org/licenses/>.
18 *
19 * Contributors:
20 * Olivier Langella <Olivier.Langella@moulon.inra.fr> - initial API and
21 *implementation
22 ******************************************************************************/
23
25
26namespace pappso
27{
29 OboPsiModHandlerInterface &sink, const QString &name_search)
30 : m_sink(sink)
31{
32 m_nameMatch.setPattern(QString(name_search).replace("*", "(.*)"));
33 m_nameMatch.setPatternOptions(QRegularExpression::CaseInsensitiveOption);
34}
35
39
40
41void
43{
44 // qDebug() << term._psi_mod_label << " " << term._psi_ms_label;
45 if(m_nameMatch.match(term.m_name).hasMatch())
46 {
48 }
49}
50
51} // namespace pappso
void setOboPsiModTerm(const OboPsiModTerm &term) override
triggered function on each obo term when parsing obo file
FilterOboPsiModTermName(OboPsiModHandlerInterface &sink, const QString &name_search)
OboPsiModHandlerInterface & m_sink
virtual void setOboPsiModTerm(const OboPsiModTerm &term)=0
triggered function on each obo term when parsing obo file
tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multichar...
Definition aa.cpp:39